First of all, what other cars besides Prius accumulate average MPG at each fillup?
I always compare what my Prius says with what the gas station fillup says. This way, if I find a pump that is so generous as to agree with my Prius, I always go back to that pump, hoping to repeat the experience. It doesn't always exactly agree - - sometimes more, sometimes less, but at least not so consistently lower MPG as with most pumps.
Of course, tire wear has an effect. I wonder if many GPS readouts include total miles traveled between resets so that the MPG calculation could use that highly accurate miles figure in the calculation.
I guess when you're not getting 50 MPG, it doesn't make a whole lot of sense to worry what side of the allowed tolerance the pumps are set at. But we Prius owners are a finicky bunch. We hate to see such consistently high gallon readings across all the pumps we use over the years. But why not campaign to require MPG readout in every car? My Scion doesn't have it. My old Dodge Grand Caravan didn't have it, although it did show current MPG, but not the average over any distance. Lets require that average MPG be included in the readouts in the next car we buy.