After finding 1/2" of water in the footwell after a heavy rain, I traced the leak to the compartment housing the battery and master brake cylinder, which had 6" of water in it which I siphoned out. Apparently part of the windshield drains into the battery box, which has drain holes under the battery which are inaccessable. These got clogged with leaf junk.
Does anyone know how to get to the drain holes to clean them out without removing the battery?