Any problems if I disconnect the electrical wiring to my control trac?

My control trac 4wd on my 97 was acting up and by pulling #27 fuse to disable the 4wd, the int lights/pwr windows were also disabled. So I went ahead and just pulled the large plug that goes to the transfer case, is this hurting anything if I do this indefinitely? My 4wd lights blink, which I don't mind, I assume its going straight into error mode which I feel is better then letting the car lock the front wheels together in turns a few times before it goes to error mode. Any suggestions greatly appreciated. Thanks