I noticed on my 04 Accord coupe that the passenger side door doesn't
line up very well. The rubber seal at the very top, visible with the
door closed from the outside, doesn't make contact during the last 6
inches or so, starting from the rear of the door. Also, the tiny
horizontal ledge above the door handle (and right below the window) is
higher than the matching rear quarter panel. Also, the bottom on the
door is sunk in a little too far. The drivers door matches up
perfectly. Take a look at your 03-05 coupe, is yours like this?